Guy Salomon and I recently finished preparing a survey article for the Proceedings of IWOTA 2014. The talk I gave at the conference was an overview of the current state of this problem, so it made sense to prepare a contribution that did the same. I discussed this at length in a previous post. I think that the current survey is currently the best overview of the subject, and also contains some modest improvements and corrections to what appears in the literature. Here is the link: The isomorphism problem for complete Pick algebras: a survey.